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Software engineer – open source pathogen data platforms

Basel
The Biozentrum, University of Basel
Software Ingenieur
EUR 87’500 pro Jahr
Inserat online seit: 23 August
Beschreibung

Your position

* Extending Loculus, a modular genomic data platform, including frontend (TypeScript / React / astro), backend (springboot / Kotlin / python / Postgres), and REST API systems
* Building integrations with analytical tools like Nextclade, and interfacing with systems like Cephalopod (ARTIC2 analytic system)
* Wiring Loculus into the ARTIC2 sequencing pipeline to support easy local data storage, while extending its interaction with Pathoplexus to ensure 'one-button' global data sharing
* Developing features for decentralized data control, embargo settings, submission portals, and federated querying
* Supporting the Loculus / Pathoplexus team with international rollouts, community feedback integration, and platform documentation

Your profile

1. Professional experience in software engineering, preferably with open-source contributions
2. Proficiency in at least some of our stack : JavaScript / TypeScript, Kotlin, React, Python
3. Familiarity with REST APIs, database architecture, and CI / CD tools like GitHub Actions
4. Experience with or interest in scientific computing, bioinformatics, or data governance
5. Comfortable working in a distributed team, communicating asynchronously, and collaborating via GitHub
6. Excellent communication and interpersonal skills, with the ability to engage and collaborate effectively with stakeholders from diverse backgrounds - including technical and non-technical teams - to gather requirements, align on goals, and co-design practical, user-centered solutions.
7. Desired : Experience with Docker, Kubernetes, or cloud systems
8. Desired : Experience developing data pipelines for biological data (snakemake / python / bash scripting)
9. Desired : Experience working on public health or non-profit technology initiatives
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